Selected Publications
Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling
Weingarten-Gabbay S✉, Bauer MR, Stanton AC, Klaeger S, Verzani EK, López D, Clauser KR, Carr SA, Abelin JG, Rice CM,
Sabeti PC✉. Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling. bioRxiv. 2023
The HLA-II immunopeptidome of SARS-CoV-2
Weingarten-Gabbay S*✉, Chen D-Y*, Sarkizova S*, Taylor HB, Gentili M, Pearlman LR, Bauer MR, Rice CM, Clauser KR, Hachoen N, Carr SA, Abelin JG, Saeed M, Sabeti PC. Cell Reports. 2023
HLA-I immunopeptidome profiling of human cells infected with high-containment enveloped viruses
Weingarten-Gabbay S*✉, Pearlman LR*, Chen D-Y, Klaeger S, Taylor HB, Welch NL, Keskin DB, Carr SA, Abelin JG, Saeed M, Sabeti PC. STAR protocols. 2022
Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs
Weingarten-Gabbay S*✉, Klaeger S*✉, Sarkizova S*, Pearlman LR, Chen D-Y, …, Hacohen N, Carr SA, Abelin JG, Saeed M✉, Sabeti PC. Cell. 2021
> Featured on Cell’s cover, HFSP highlight, Broad Institute news, Boston University news
Systematic interrogation of human promoters
Weingarten-Gabbay S*✉, Nir R*, Lubliner S, Sharon E, Kalma Y, Weinberger A and Segal E✉. Genome Research. 2019
Sequence features of viral and human internal ribosome entry sites predictive of their activity
Gritsenko AA*, Weingarten-Gabbay S*, Elias-Kirma S, Nir R, de Ridder D and Segal E. PLoS Comp Biol. 2017
Systematic discovery of cap-independent translation sequences in human and viral genomes
Weingarten-Gabbay S, Elias-Kirma S, Nir R, Gritsenko AA, Yakhini Z, Stern-Ginossar N, Weinberger A and Segal E. Science. 2016
>Perspective in Science, Highlight in Cell Systems, Faculty of 1000 review
Toward a systematic understanding of translational regulatory elements in human and viruses
Weingarten-Gabbay S and Segal E. RNA Biology. 2016.
The grammar of transcriptional regulation
Weingarten-Gabbay S and Segal E. Human Genetics. 2014
A shared architecture for promoters and enhancers
Weingarten-Gabbay S and Segal E. Nature Genetics. 2014 (News and Views on Core et al)
The translation initiation factor DAP5 promotes IRES-driven translation of p53 mRNA
Weingarten-Gabbay S*, Khan D*, Liberman N, Yoffe Y, Bialik S, Das S, Oren M and Kimchi A. Oncogene. 2013
* co-first author ✉ corresponding author
Additional Publications
Hernández G, García A, Weingarten-Gabbay S, Mishra RK, Hussain T, Amiri M, Moreno-Hagelsieb G, Montiel-Dávalos A, Lasko P, Sonenberg N. NAR. 2023
DAP5 drives translation of specific mRNA targets with upstream ORFs in human embryonic stem cells
David M, Olender T, Mizrahi O, Weingarten-Gabbay S, Friedlander G, Savidor A, Levin Y, Salomon V, Stern-Ginossar N, Bialik S and Kimchi A. RNA. 2022
Structured elements drive extensive circular RNA translation
Chen CK, Cheng R, Demeter J, Chen J, Weingarten-Gabbay S, Jiang L, Snyder MP, Weissman JS, Segal E, Jackson PK and Chang HY. Molecular Cell. 2021.
Taylor HB, Klaeger S, Clauser KR, Sarkizova S, Weingarten-Gabbay S, Graham DB, Carr SA, Abelin JG. Mol Cell Proteomics. 2021
The coding capacity of SARS-CoV-2
Finkel Y*, Mizrahi O*, Nachshon A, Weingarten-Gabbay S, Yahalom-Ronen Y, Tamir H, Achdout H, Melamed S, Weiss S, Israely T, Paran N, Schwartz M and Stern-Ginossar N. Nature. 2020
Vainberg Slutskin I, Weingarten-Gabbay S, Nir R, Weinberger A and Segal E. Nature Communications. 2018
Noise in gene expression is coupled to growth rate
Keren L*, van Dijk D*, Weingarten-Gabbay S, Davidi D, Jona G, Weinberger A, Milo R and Segal E. Genome Research. 2015